Detailed information of matrix profile UN1173.1

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Profile summary

Name: ATOH1::ONECUT1
Matrix ID: UN1173.1
Class: Basic helix-loop-helix factors (bHLH)::Homeo domain factors
Family: Tal-related::HD-CUT
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation:
Uniprot ID: Q92858   Q9UBC0  
Source: 40205063
Comment:

Sequence logo

Frequency matrix

         
A [ 6050 441 97 2132 6965 374 2479 2347 2794 1480 3243 2661 366 6507 55 5048 227 88 ]
C [ 99 124 5902 139 40 366 2169 1917 1581 1704 768 2402 7031 55 826 1613 821 68 ]
G [ 940 92 57 5029 133 95 757 1364 1344 1742 2274 1963 30 693 1437 702 53 6873 ]
T [ 388 6820 1421 177 339 6642 2072 1849 1758 2551 1192 451 50 222 5159 114 6376 448 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN1173.1 UN1173 1 ATOH1::ONECUT1 Homo sapiens
Tal-related::HD-CUT Basic helix-loop-helix factors (bHLH)::Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: