Detailed information of matrix profile UN1139.1

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Profile summary

Name: CLOCK::FOXA1
Matrix ID: UN1139.1
Class: Basic helix-loop-helix factors (bHLH)::Fork head/winged helix factors
Family: PAS domain factors::FOX
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation:
Uniprot ID: O15516   P55317  
Source: 40205063
Comment:

Sequence logo

Frequency matrix

         
A [ 7 134 0 13 2 2 3 31 53 30 1 51 7 4 6 76 12 55 ]
C [ 132 1 126 3 7 0 11 42 17 19 10 0 6 1 5 1 89 17 ]
G [ 1 8 2 127 1 131 23 6 17 30 5 89 7 32 21 60 15 3 ]
T [ 3 0 15 0 133 10 106 64 56 64 127 3 123 106 111 6 27 68 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN1139.1 UN1139 1 CLOCK::FOXA1 Homo sapiens
PAS domain factors::FOX Basic helix-loop-helix factors (bHLH)::Fork head/winged helix factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: