Detailed information of matrix profile UN1139.1

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Profile summary

Name: CLOCK::FOXA1
Matrix ID: UN1139.1
Class: Basic helix-loop-helix factors (bHLH)::Fork head/winged helix factors
Family: PAS domain factors::FOX
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: CAP-SELEX
Validation:
Uniprot ID: O15516   P55317  
Source: 40205063
Comment:

Sequence logo

Frequency matrix

         
A [ 68 27 6 111 106 123 3 127 64 56 64 106 10 133 0 15 0 3 ]
C [ 3 15 60 21 32 7 89 5 30 17 6 23 131 1 127 2 8 1 ]
G [ 17 89 1 5 1 6 0 10 19 17 42 11 0 7 3 126 1 132 ]
T [ 55 12 76 6 4 7 51 1 30 53 31 3 2 2 13 0 134 7 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN1139.1 UN1139 1 CLOCK::FOXA1 Homo sapiens
PAS domain factors::FOX Basic helix-loop-helix factors (bHLH)::Fork head/winged helix factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: