Detailed information of matrix profile MA2731.1

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Profile summary
Name: sep3
Matrix ID: MA2731.1
Class: MADS box factors
Family: MIKC
Collection: CORE
Taxon: Plants
Species: Solanum lycopersicum
Data Type: DAP-seq
Validation: 27203113
Uniprot ID: Q7Y039  
Source: GSE172260
Comment: Validated by inference and motif similarity with AGL13

Sequence logo

Frequency matrix

         
A [ 18 12 7 9 1 5 7 4 0 10 1 1 0 3 7 1 0 23 37 37 19 ]
C [ 6 2 1 4 1 0 0 37 47 23 0 0 0 0 2 0 0 4 3 3 3 ]
G [ 1 1 0 5 0 0 6 1 0 3 1 0 0 0 10 45 47 11 1 1 6 ]
T [ 22 32 39 29 45 42 34 5 0 11 45 46 47 44 28 1 0 9 6 6 19 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2731.1 MA2731 1 sep3 Solanum lycopersicum
MIKC MADS box factors
     

-log(P-value) = 1.8e-41

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