Detailed information of matrix profile MA2731.1

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Profile summary
Name: sep3
Matrix ID: MA2731.1
Class: MADS box factors
Family: MIKC
Collection: CORE
Taxon: Plants
Species: Solanum lycopersicum
Data Type: DAP-seq
Validation: 27203113
Uniprot ID: Q7Y039  
Source: GSE172260
Comment: Validated by inference and motif similarity with AGL13

Sequence logo

Frequency matrix

         
A [ 19 6 6 9 0 1 28 44 47 46 45 11 0 5 34 42 45 29 39 32 22 ]
C [ 6 1 1 11 47 45 10 0 0 0 1 3 0 1 6 0 0 5 0 1 1 ]
G [ 3 3 3 4 0 0 2 0 0 0 0 23 47 37 0 0 1 4 1 2 6 ]
T [ 19 37 37 23 0 1 7 3 0 1 1 10 0 4 7 5 1 9 7 12 18 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2731.1 MA2731 1 sep3 Solanum lycopersicum
MIKC MADS box factors
     

-log(P-value) = 1.8e-41

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