Detailed information of matrix profile MA2560.1

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Profile summary
Name: POGK
Matrix ID: MA2560.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 39605320
Uniprot ID: Q9P215  
Source: 39605530
Comment: TF classification inferred by sequence similarity

Sequence logo

Frequency matrix

         
A [ 2 1 0 1000 0 0 0 1000 0 992 104 22 0 6 ]
C [ 9 999 0 0 1000 264 0 0 3 2 163 5 990 0 ]
G [ 0 0 1000 0 0 0 0 0 0 1 5 370 0 994 ]
T [ 989 0 0 0 0 736 1000 0 997 5 728 603 10 0 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2560.1 MA2560 1 POGK Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: