JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0019.1 Ddit3::Cebpa NA Basic leucine zipper factors (bZIP) CEBP-related
MA0019.2 Ddit3::Cebpa NA Basic leucine zipper factors (bZIP) CEBP-related
MA0020.1 Dof2 NA Other C4 zinc finger-type factors DOF
MA0020.2 Dof2 NA Other C4 zinc finger-type factors DOF
MA0021.1 Dof3 NA Other C4 zinc finger-type factors DOF
MA0022.1 dl NA Rel homology region (RHR) factors
MA0023.1 dl NA Rel homology region (RHR) factors Rel homology domain (RHD)
MA0024.1 E2F1 NA Fork head/winged helix factors E2F
MA0024.2 E2F1 NA Fork head/winged helix factors E2F
MA0024.3 E2F1 NA Fork head/winged helix factors E2F
Showing 10 profiles of page 6 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.