JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0233.1 mirr Drosophila melanogaster Homeo domain factors TALE-type HD
MA0234.1 oc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0235.1 onecut Drosophila melanogaster Homeo domain factors HD-CUT
MA0236.1 otp Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0237.1 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0237.2 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0238.1 pb Drosophila melanogaster Homeo domain factors HOX
MA0239.1 prd Drosophila melanogaster Paired box factors
MA0239.2 prd Drosophila melanogaster Paired box factors
MA0240.1 repo Drosophila melanogaster Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 51 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.