JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0222.2 exd Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0224.1 exex Drosophila melanogaster Homeo domain factors HOX
MA0225.1 ftz Drosophila melanogaster Homeo domain factors HOX
MA0226.1 hbn Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0227.1 hth Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0228.1 ind Drosophila melanogaster Homeo domain factors HOX
MA0229.1 inv Drosophila melanogaster Homeo domain factors NK
MA0230.1 lab Drosophila melanogaster Homeo domain factors HOX
MA0231.1 lbe Drosophila melanogaster Homeo domain factors NK
MA0232.1 lbl Drosophila melanogaster Homeo domain factors NK
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Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.