JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0205.2 Trl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0205.3 Trl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0206.1 abd-A Drosophila melanogaster Homeo domain factors HOX
MA0207.1 achi Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0208.1 al Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0209.1 ap Drosophila melanogaster Homeo domain factors HD-LIM
MA0210.1 ara Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0211.1 bap Drosophila melanogaster Homeo domain factors NK
MA0212.1 bcd Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0213.1 brk Drosophila melanogaster
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Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.