JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0164.1 Nr2e3 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0164.2 Nr2e3 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0165.1 Abd-B Drosophila melanogaster Homeo domain factors HOX
MA0166.1 Antp Drosophila melanogaster Homeo domain factors HOX
MA0167.1 Awh Drosophila melanogaster Homeo domain factors HD-LIM
MA0168.1 B-H1 Drosophila melanogaster Homeo domain factors HOX
MA0169.1 B-H2 Drosophila melanogaster Homeo domain factors HOX
MA0170.1 C15 Drosophila melanogaster Homeo domain factors NK
MA0171.1 CG11085 Drosophila melanogaster Homeo domain factors NK
MA0172.1 CG11294 Drosophila melanogaster Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 43 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.