JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0160.3 NR4A2 Homo sapiens Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0161.1 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0161.2 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0161.3 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0162.1 Egr1 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.2 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.3 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.4 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.5 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0163.1 PLAG1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 42 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.