JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0148.5 FOXA1 Homo sapiens Fork head/winged helix factors FOX
MA0149.1 EWSR1-FLI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0150.1 NFE2L2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA0150.2 Nfe2l2 Mus musculus Basic leucine zipper factors (bZIP) Jun-related
MA0150.3 Nfe2l2 Mus musculus Basic leucine zipper factors (bZIP) Jun-related
MA0151.1 Arid3a Mus musculus ARID ARID-related
MA0152.1 NFATC2 Homo sapiens Mus musculus Rattus norvegicus Rel homology region (RHR) factors NFAT-related factors
MA0152.2 Nfatc2 Mus musculus Rel homology region (RHR) factors NFAT-related factors
MA0152.3 Nfatc2 Mus musculus Rel homology region (RHR) factors NFAT-related factors
MA0153.1 HNF1B Homo sapiens Mus musculus Homeo domain factors POU domain factors
Showing 10 profiles of page 39 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.