JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0087.3 Sox5 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0088.1 znf143 Xenopus laevis C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0088.2 ZNF143 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0088.3 ZNF143 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0089.1 MAFG::NRF1 Gallus gallus Basic leucine zipper factors (bZIP)::Uncharacterized Maf-related::NRF
MA0089.2 MAFG::NRF1 Homo sapiens Basic leucine zipper factors (bZIP)::Uncharacterized Maf-related::NRF
MA0089.3 MAFG::NRF1 Homo sapiens Basic leucine zipper factors (bZIP)::Uncharacterized Maf-related::NRF
MA0090.1 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
MA0090.2 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
MA0090.3 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
Showing 10 profiles of page 23 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.