JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0365.1 RFX1 NA Fork head/winged helix factors RFX-related factors
MA0365.2 RFX1 NA Fork head/winged helix factors RFX-related factors
MA0366.1 RGM1 NA C2H2 zinc finger factors
MA0367.1 RGT1 NA C6 zinc cluster factors
MA0367.2 RGT1 NA C6 zinc cluster factors
MA0368.1 RIM101 NA C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0369.1 RLM1 NA MADS box factors Regulators of differentiation
MA0369.2 RLM1 NA MADS box factors Regulators of differentiation
MA0370.1 RME1 NA C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0371.1 ROX1 NA High-mobility group (HMG) domain factors
Showing 10 profiles of page 72 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.