JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0025.1 NFIL3 Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0025.2 NFIL3 Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0025.3 NFIL3 Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0026.1 Eip74EF Drosophila melanogaster Tryptophan cluster factors Ets-related
MA0027.1 En1 Mus musculus Homeo domain factors NK
MA0027.2 EN1 Homo sapiens Homeo domain factors NK
MA0027.3 EN1 Homo sapiens Homeo domain factors NK
MA0028.1 ELK1 Homo sapiens Tryptophan cluster factors Ets-related
MA0028.2 ELK1 Homo sapiens Tryptophan cluster factors Ets-related
MA0028.3 ELK1 Homo sapiens Tryptophan cluster factors Ets-related
Showing 10 profiles of page 7 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.