JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0205.2 Trl NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0205.3 Trl NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0206.1 abd-A NA Homeo domain factors HOX
MA0207.1 achi NA Homeo domain factors TALE-type homeo domain factors
MA0208.1 al NA Homeo domain factors Paired-related HD factors
MA0209.1 ap NA Homeo domain factors HD-LIM
MA0210.1 ara NA Homeo domain factors TALE-type homeo domain factors
MA0211.1 bap NA Homeo domain factors NK
MA0212.1 bcd NA Homeo domain factors Paired-related HD factors
MA0213.1 brk NA
Showing 10 profiles of page 48 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.