JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2701.1 FZF1 NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2702.1 PIP2 NA C6 zinc cluster factors
MA2703.1 PPR1 NA C6 zinc cluster factors
MA2704.1 RTG1 NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2705.1 SDD4 NA C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2706.1 SMP1 NA MADS box factors Responders to external signals (SRF/RLM1)
MA2707.1 ACA1 NA Basic leucine zipper factors (bZIP) Jun-related
MA2708.1 SlDof4 NA Other C4 zinc finger-type factors DOF
MA2709.1 SolycHsfA2 NA Heat shock factors HSF
MA2710.1 SolycHsfB1 NA Heat shock factors HSF
Showing 10 profiles of page 452 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.