JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2651.1 GLYMA-20G154400 NA TCP
MA2652.1 GLYMA-01G053800 NA GCM domain factors WRKY
MA2653.1 GLYMA-03G042700 NA GCM domain factors WRKY
MA2654.1 GLYMA-05G127600 NA GCM domain factors WRKY
MA2655.1 GLYMA-08G218600 NA GCM domain factors WRKY
MA2656.1 GLYMA-14G006800 NA GCM domain factors WRKY
MA2657.1 GLYMA-14G028900 NA GCM domain factors WRKY
MA2658.1 GLYMA-19G094100 NA GCM domain factors WRKY
MA2659.1 GLYMA-08G281200 NA Homeo domain factors PLINC
MA2660.1 GLYMA-12G168700 NA Homeo domain factors PLINC
Showing 10 profiles of page 447 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.