JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2591.1 ZNF850 NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2592.1 MKX NA Homeo domain factors TALE-type HD
MA2593.1 ZNF362 NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2594.1 DMTF1 NA Tryptophan cluster factors Myb-SANT
MA2595.1 ZNF700 NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2596.1 ZXDA NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2597.1 LEUTX NA Homeo domain factors Paired-related HD
MA2598.1 MSANTD1 NA Tryptophan cluster factors Myb-SANT
MA2599.1 TIGD3 NA
MA2600.1 TPRX1 NA Homeo domain factors Paired-related HD
Showing 10 profiles of page 441 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.