JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0173.1 CG11617 NA Homeo domain factors TALE-type HD
MA0174.1 Dbx NA Homeo domain factors Homeo
MA0175.1 lms NA Homeo domain factors NK
MA0176.1 CG15696 NA Homeo domain factors NK
MA0177.1 CG18599 NA Homeo domain factors NK
MA0178.1 CG32105 NA Homeo domain factors HD-LIM
MA0179.1 CG32532 NA Homeo domain factors Paired-related HD factors
MA0180.1 Vsx2 NA Homeo domain factors Paired-related HD factors
MA0181.1 Vsx1 NA Homeo domain factors Paired-related HD factors
MA0182.1 CG4328 NA Homeo domain factors HD-LIM
Showing 10 profiles of page 44 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.