JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0164.1 Nr2e3 NA Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0164.2 Nr2e3 NA Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0165.1 Abd-B NA Homeo domain factors HOX
MA0166.1 Antp NA Homeo domain factors HOX
MA0167.1 Awh NA Homeo domain factors HD-LIM
MA0168.1 B-H1 NA Homeo domain factors HOX
MA0169.1 B-H2 NA Homeo domain factors HOX
MA0170.1 C15 NA Homeo domain factors NK
MA0171.1 CG11085 NA Homeo domain factors NK
MA0172.1 CG11294 NA Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 43 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.