JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2343.1 MYB3R3 NA Tryptophan cluster factors MYB
MA2344.1 REV NA Homeo domain factors HD-ZIP
MA2345.1 OS02G0104500 NA Tryptophan cluster factors Trihelix
MA2347.1 OS04G0486400 NA Tryptophan cluster factors Trihelix
MA2348.1 IDD6 NA C2H2 zinc finger factors IDD
MA2349.1 OsCCA1 NA Tryptophan cluster factors MYB-related
MA2350.1 OsFBH1 NA Basic helix-loop-helix factors (bHLH) bHLH
MA2351.1 OsEIL3 NA Other all-alpha-helical DNA-binding domains EIL
MA2353.1 PK02532.1 NA Tryptophan cluster factors MYB-related
MA2354.1 PK06182.1 NA Tryptophan cluster factors MYB
Showing 10 profiles of page 417 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.