JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0156.4 FEV NA Tryptophan cluster factors Ets-related
MA0157.1 FOXO3 NA Fork head/winged helix factors FOX
MA0157.2 FOXO3 NA Fork head/winged helix factors FOX
MA0157.3 Foxo3 NA Fork head/winged helix factors FOX
MA0157.4 Foxo3 NA Fork head/winged helix factors FOX
MA0158.1 HOXA5 NA Homeo domain factors HOX
MA0158.2 HOXA5 NA Homeo domain factors HOX
MA0159.1 RARA::RXRA NA Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0160.1 NR4A2 NA Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0160.2 NR4A2 NA Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
Showing 10 profiles of page 41 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.