JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2265.1 retn NA ARID ARID-related
MA2266.1 Rfx NA Fork head/winged helix factors RFX-related factors
MA2267.1 rib NA C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2268.1 sage NA Homeo domain factors TALE-type homeo domain factors
MA2269.1 sc NA Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA2270.1 scrt NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2271.1 sens NA C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2272.1 slp2 NA Fork head/winged helix factors FOX
MA2273.1 Sox102F NA High-mobility group (HMG) domain factors SOX-related factors
MA2274.1 Sox14 NA High-mobility group (HMG) domain factors SOX-related factors
Showing 10 profiles of page 409 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.