JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2215.1 dm NA Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2216.1 Doc2 NA T-Box factors TBX6-related factors
MA2217.1 dpn NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2218.1 dsf NA Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2219.1 E(spl)m3-HLH NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2220.1 E(spl)mbeta-HLH NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2221.1 E(spl)mdelta-HLH NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2222.1 E(spl)mgamma-HLH NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2223.1 EcR NA Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2224.1 Eip75B NA Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
Showing 10 profiles of page 404 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.