JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0118.1 Macho-1 NA C2H2 zinc finger factors
MA0118.2 Macho-1 NA C2H2 zinc finger factors
MA0119.1 NFIC::TLX1 NA SMAD/NF-1 DNA-binding domain factors::Homeo domain factors Nuclear factor 1::NK
MA0121.1 ARR10 NA Tryptophan cluster factors GARP_ARR-B
MA0121.2 ARR10 NA Tryptophan cluster factors GARP_ARR-B
MA0122.1 Nkx3-2 NA Homeo domain factors NK
MA0122.2 NKX3-2 NA Homeo domain factors NK
MA0122.3 Nkx3-2 NA Homeo domain factors NK
MA0122.4 Nkx3-2 NA Homeo domain factors NK
MA0123.1 abi4 NA AP2/EREBP ERF/DREB
Showing 10 profiles of page 32 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.