JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1678.3 NTL8 NA GCM domain factors NAC
MA1679.1 RAP2-1 NA AP2/EREBP ERF/DREB
MA1679.2 RAP2-1 NA AP2/EREBP ERF/DREB
MA1682.1 TCX3 NA CPP
MA1682.2 TCX3 NA CPP
MA1683.1 FOXA3 NA Fork head/winged helix factors FOX
MA1683.2 FOXA3 NA Fork head/winged helix factors FOX
MA1684.1 Foxn1 NA Fork head/winged helix factors FOX
MA1685.1 ARF10 NA B3 ARF
MA1685.2 ARF10 NA B3 ARF
Showing 10 profiles of page 319 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.