JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1670.1 DREB1C NA AP2/EREBP ERF/DREB
MA1670.2 DREB1C NA AP2/EREBP ERF/DREB
MA1671.1 ERF118 NA AP2/EREBP ERF/DREB
MA1671.2 ERF118 NA AP2/EREBP ERF/DREB
MA1672.1 GBF2 NA Basic leucine zipper factors (bZIP) Group G
MA1672.2 GBF2 NA Basic leucine zipper factors (bZIP) Group G
MA1673.1 LBD18 NA Other C4 zinc finger-type factors LBD
MA1673.2 LBD18 NA Other C4 zinc finger-type factors LBD
MA1674.1 NAC017 NA GCM domain factors NAC
MA1674.2 NAC017 NA GCM domain factors NAC
Showing 10 profiles of page 317 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.