JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0612.3 EMX1 NA Homeo domain factors NK
MA0613.1 FOXG1 NA Fork head/winged helix factors FOX
MA0614.1 Foxj2 NA Fork head/winged helix factors FOX
MA0615.1 Gmeb1 NA SAND domain factors GMEB
MA0615.2 Gmeb1 NA SAND domain factors GMEB
MA0616.1 Hes2 NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0616.2 HES2 NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0616.3 HES2 NA Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0618.1 LBX1 NA Homeo domain factors NK
MA0618.2 LBX1 NA Homeo domain factors NK
Showing 10 profiles of page 121 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.